PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G01440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 356aa    MW: 39907.8 Da    PI: 4.4849
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G01440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-1243100155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++   ++ k+ + g ++++e Aa+a++ a++k++g
  LPERR11G01440.1  43 SIYRGVTRHRWTGRFEAHLWDkNCSTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 100
                      57*****************99554433744577777********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-1043100IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1543109IPR016177DNA-binding domain
SMARTSM003801.5E-2244114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-1444109IPR001471AP2/ERF domain
PROSITE profilePS5103219.09844108IPR001471AP2/ERF domain
PRINTSPR003672.5E-64556IPR001471AP2/ERF domain
PROSITE profilePS510329.545118182IPR001471AP2/ERF domain
SMARTSM003806.5E-4144188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-7156182IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-6156184IPR016177DNA-binding domain
PRINTSPR003672.5E-6164184IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MACKRARRTQ KNTTKAKRPK KESAAIKESS DPSANGGGGK RSSIYRGVTR HRWTGRFEAH  60
LWDKNCSTSL QNKKKGRQGA YDSEEAAARA YDLAALKYWG AETQLNFPLE EYEKERSEME  120
GVSREEYLAS LRRRSSGFSR GVSKYRGVAR LPLFTDTQEE AAKAYDLAAI EYRGANAVTN  180
FDISCYLDQP QLLAQLQQEP QVVPALHEEP QDDDQTENAA QELSSSEANT SSDNNEPLAV  240
DDSAECMNEP LLVDGIEESL WSPCLDYELD TMTGAYFSNS MNFSEWFNDE AFERSMDHLF  300
EGCSSITEGS KDSSGLAEYN LFEECNMLEK DISDREGISP QPNNISCPQK MISVCN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149681e-159AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005091e-159BX000509.2 Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126201e-159CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619972.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotQ6X5Y69e-66WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A0D9XNM70.0A0A0D9XNM7_9ORYZ; Uncharacterized protein
STRINGBGIOSGA036704-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os12g03290.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-47AP2 family protein